Scaffold Ga0134854_1005153

Overview

Basic Information

• Taxon OID: 3300029822
• Scaffold ID: Ga0134854_1005153
• Source Dataset Name: Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-3-30-T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chongqing University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7206
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Fermentibacteria → unclassified Candidatus Fermentibacteria → candidate division Hyd24-12 bacterium ADurb.Bin004 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location

• Location Name: China: Chengdu
• Coordinates
  • Lat. (^o): 30.65
  • Long. (^o): 104.06
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072475	Metagenome / Metatranscriptome	121	N
F084407	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134854_100515313	F084407	N/A	VTNLPTSGNVLALVPMLTPYTPTSVQFDLLYPYALEEFRGDDPGCSKTGAERALAYLMAHYLAGGEDQIGFSGEKIDDYSYTVAGPAATSSRWYVLYRQQLDRCRDARAISPVGLTGVQHADATGLKDLHLDQNPVVRAREGFR
Ga0134854_100515314	F072475	GGAGG	MSDSFASRFMTPEEKQAMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDHLLALLNRVMKDSIREHHTDNDAVRKQQLMRQATDITLTLLNEDIYYRARAKLHLRDVLAAVAEHPEYLDLSPAEAENIRRWNGCSP