Scaffold Ga0134854_1004975

Overview

Basic Information

• Taxon OID: 3300029822
• Scaffold ID: Ga0134854_1004975
• Source Dataset Name: Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-3-30-T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chongqing University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7449
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (56.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location

• Location Name: China: Chengdu
• Coordinates
  • Lat. (^o): 30.65
  • Long. (^o): 104.06
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064748	Metagenome / Metatranscriptome	128	Y
F078879	Metagenome / Metatranscriptome	116	N
F092110	Metagenome / Metatranscriptome	107	Y
F103501	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134854_100497512	F078879	AGG	MTPDVSDEVKEGYDLLEGIGIIERTESGQYCPTEVGAAIIYAVLCKQMLGAGEDEFKSEESQQVMLNRLEEMDLVEQGDESFIITIEGFTTFFTNLTYDCPCREEFLDWLALATAELAEEMEQH
Ga0134854_100497513	F103501	AGGA	MVKNIILEGVVSFDAKYDLWCVDEDYIENIISDFEDKKVLVTITVI
Ga0134854_100497514	F064748	AGG	MKMYRFIGNMEDVTPCGNMDEECIAVGCKGKVWGQCHFDPLLNLLSSGAEYFAVIFTECVICDTVFRVEKDGAYSKGGLYPLFSDNGKLWMETGHLKNHFKQRTGYNCETHTPIYLYQEYPEDAEVVEYVLVEVKRTPVKKFVEGGE
Ga0134854_100497521	F092110	N/A	MSCKDYLELKPGMEVKLSYEPWGYKNVDAVIDSVGVDYHHDETHNCGVFHPIIACYVGKYRMTFNGPINWETLVIKPCRKVYVKDLREGDVIERDEMRGLIEITSNENVYIRWYDKSCKVTYYTNYRNDNIFENTELVGHVNL