Scaffold Ga0134854_1001213

Overview

Basic Information

• Taxon OID: 3300029822
• Scaffold ID: Ga0134854_1001213
• Source Dataset Name: Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-3-30-T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chongqing University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26716
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (93.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location

• Location Name: China: Chengdu
• Coordinates
  • Lat. (^o): 30.65
  • Long. (^o): 104.06
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072352	Metagenome / Metatranscriptome	121	Y
F080011	Metagenome / Metatranscriptome	115	N
F088842	Metagenome / Metatranscriptome	109	N
F088943	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134854_100121311	F080011	GAGG	MTWDDLEKLRDRLNTVLEYERAEEGFSPIEEDYYVQYRQAARRAVLDLDPDHSYDRDRYQTLQAIYDTVGEIYEIRSAKLRMVVQDRVVFKRAGERPENLIEGERVMYDMAISLGGHGNA
Ga0134854_100121312	F088943	GAGG	MRGLSQSVWAHEDQLISIYRRTGDAQFTHSEIADLISRGAMLRYTAPGIFVPARDAKGNPIKAGSRSRSQVWRWHPYAAELCRRAIERDHRWENLAAGLTGGSECA
Ga0134854_100121313	F072352	GAGG	MSSKTGGLLSHLHHAPTVHHLPGCPNGCGEMLALDDGWYCPICFRFRGYRRGEAHP
Ga0134854_100121335	F088842	AGGAGG	MKNDEGIAYGLIAVVMFIGMVALIFICFTPAMNGVIEAANTLIGDGKVGVQTAGAVEWSLGWFAAIPIIGLLGIGYWAYIRALEENPSD