NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247275_1144210

Scaffold Ga0247275_1144210


Overview

Basic Information
Taxon OID3300029817 Open in IMG/M
Scaffold IDGa0247275_1144210 Open in IMG/M
Source Dataset NameSoil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota, Marcell Experimental Forest
CoordinatesLat. (o)47.5062Long. (o)-93.45426667Alt. (m)Depth (m)25 to 50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053617Metagenome / Metatranscriptome141N
F106052Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0247275_11442101F053617AGGAGGMLFMTAVFGGLMLLSIESRRRVIAILVIGAITVLGTSPAPAQVSAFCLPCVIQAVLTTITVTIGGRLTQVNGVLAVILRLFQQTVWPPSKTRLAKSQIQSIIVQFLGVLQSIMSINPHTATLPHPVALENVMRDRSTVDLYSVPPAYVN
Ga0247275_11442102F106052N/AYLNQKPEQPLLGCYEELARKFPEGLAGLPQLPEELSGAVTAPKSVRA

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