Basic Information | |
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Taxon OID | 3300029817 Open in IMG/M |
Scaffold ID | Ga0247275_1074784 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 924 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota, Marcell Experimental Forest | |||||||
Coordinates | Lat. (o) | 47.5062 | Long. (o) | -93.45426667 | Alt. (m) | Depth (m) | 25 to 50 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F020755 | Metagenome / Metatranscriptome | 222 | Y |
F023646 | Metagenome / Metatranscriptome | 209 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247275_10747841 | F023646 | N/A | LTKKMITEIPHECAKSKAFTMKLGDLPNMVDAIFDGDHERPGWVHMFANAKGCDHVDALFPQAHIEWRELGPGFPADWFSMKVNLPEVVSATQTNLPLEVIPAGRTIDDSNPDQLALLLTFGVRRDGGRAAILRQSNGAVSVEIFAPREN |
Ga0247275_10747842 | F020755 | GGAG | MTKDRIKDSDPIMIVDDCIDHVDRALTPLGWFYKHNAMHAGTTPMVLDEFGRCARCVKLGFWKPDA |
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