NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247275_1074784

Scaffold Ga0247275_1074784


Overview

Basic Information
Taxon OID3300029817 Open in IMG/M
Scaffold IDGa0247275_1074784 Open in IMG/M
Source Dataset NameSoil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)924
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota, Marcell Experimental Forest
CoordinatesLat. (o)47.5062Long. (o)-93.45426667Alt. (m)Depth (m)25 to 50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020755Metagenome / Metatranscriptome222Y
F023646Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0247275_10747841F023646N/ALTKKMITEIPHECAKSKAFTMKLGDLPNMVDAIFDGDHERPGWVHMFANAKGCDHVDALFPQAHIEWRELGPGFPADWFSMKVNLPEVVSATQTNLPLEVIPAGRTIDDSNPDQLALLLTFGVRRDGGRAAILRQSNGAVSVEIFAPREN
Ga0247275_10747842F020755GGAGMTKDRIKDSDPIMIVDDCIDHVDRALTPLGWFYKHNAMHAGTTPMVLDEFGRCARCVKLGFWKPDA

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