NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247275_1028947

Scaffold Ga0247275_1028947


Overview

Basic Information
Taxon OID3300029817 Open in IMG/M
Scaffold IDGa0247275_1028947 Open in IMG/M
Source Dataset NameSoil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1674
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota, Marcell Experimental Forest
CoordinatesLat. (o)47.5062Long. (o)-93.45426667Alt. (m)Depth (m)25 to 50
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009622Metagenome / Metatranscriptome315Y
F080967Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0247275_10289471F080967N/AMPSKRPNLTLDEQSFQSLLSAAFTIQEHNDRLRQARQTQAEPEAHPEPEANSVCPHCGALKPAGSRCERCDLEEEFRPGERLQRNWASMWLMSQEQRLWPERSSE
Ga0247275_10289474F009622GAGGMPYKDIFWMACDSTEQLRAEYGPFHTREEAEVEARKLGFGYLLRYEHILGPNEEIEEVRCIFLELQNLE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.