NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0239581_1051967

Scaffold Ga0239581_1051967


Overview

Basic Information
Taxon OID3300029798 Open in IMG/M
Scaffold IDGa0239581_1051967 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Alinen Mustajarvi, Finland - AM11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUppsala University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)920
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Alinen Mustajarvi, Finland

Source Dataset Sampling Location
Location NameFinland: Alinen Mustajarvi in Hameenlinna
CoordinatesLat. (o)61.208142Long. (o)25.113609Alt. (m)Depth (m)5.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049375Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0239581_10519671F049375N/AFKVPSTARNMSILGWKNRIASTRNIYETFDGSIRWNGMVLYAGQIRIKTASDKTFEGTLYINKGNFNYEVKDLLLNRVDLGMKEFPGDDQAIDYFNWSLTHFYPDADFSMPQISNLDFFDPPAENPELHAYNLIFADGKLHKVTTDGQSRTILIPFLYLKFVLNKLAENFGYRLQDDFFTSSTELSRLVIYHSVNLSEVLFGLQQLYYCRFVPKVKVSDFIAGLEKWFNCSFHADSKQRVIRIVSNKDVLLRSEVVEFSKNVLSLTQEIPDQITGFRFLLGPDSGDKVYQAQLDSEKGITDYIKGS
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