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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029798 Open in IMG/M |
| Scaffold ID | Ga0239581_1009363 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Alinen Mustajarvi, Finland - AM11 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Uppsala University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3072 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Alinen Mustajarvi, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Alinen Mustajarvi in Hameenlinna | |||||||
| Coordinates | Lat. (o) | 61.208142 | Long. (o) | 25.113609 | Alt. (m) | Depth (m) | 5.1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041560 | Metagenome | 159 | Y |
| F076791 | Metagenome | 117 | Y |
| F089755 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0239581_10093631 | F089755 | N/A | MIDITETPNLVSFAGNPVIFEVCSSDYLVSLGSRAVFELVVSGIDTNVGHSFTLKFAGKTLVFKSAGITEFDGLLFEVAYYGWTYIDFAFSIYQCLLENYDIQKAFDVTIGPVGTSERKITLQAKEAGADYSVTLTNVGVYGVAQGTNTPGTDDVYRDYFGILCLIRDSYGNEVGEDIKPSDIMGGAWFDISDYLKSKFASWELTRFEFPELTGNIRVHGWDYLLKYRVSFAETIAGKVKGLYSTGWKYCIAGGLNHELLTSLNENYKEYFDIEANKLRFLSWLPLTKYSRSGVTEKLFFLFQNNPDLVQYRLVVVVTFTDYTHKIINATPLASYTPYTVAEFKVGFDHLNLVNAQYGKTVQSW |
| Ga0239581_10093632 | F041560 | N/A | MLTILIADQPLDLSDDLSVSLNLKSPLFNDVGDYSFPFKVPTTVRNMAILGWKNRLASTRSIYETYDGSIRWNGMVLFVGQIRIKTASDKSFEGTIYINKGNFNYEVRDLMLDRVDFGMKSFASDQEAVDYFNWSLTHFYPEVDFSLPEISNVDFFDPQATNPELMSYNHIFPDGWLHKTTSDGTQRTILIPFLYLKFVLNKLAENFGYRLQDEFFTSSTELSRLVIYNSVNLSEVIFGLQQLYYCRLLPKVKVSEFISGLEKWFNCCFLADSKQRVVRVVSKKDVLLRSEVVEFSKNVLTISQEIPDQITGFRFLLGPDSGDKVYQAQLDAEKGMTDYIKGAVQSFSDIPPYPFTWLGDIYYVVDTNQWWVLGVNGITFLIEWQQLPAGPVLTDKFFYKWGDDKNKYETIFSSLSDKYIVVSCGNPGTDKDKVTPRLFYVGMVSVGGWGSPAHLRGLANNGNLSLRYTGSSGLFNLYWKDWVNWIMDTRKSVKIEKQMDFIELKELDFTKRYRINGINYLISEISVTLNNSSIKSAQLKCFTAP |
| Ga0239581_10093633 | F076791 | N/A | IVIDPKTTKNLMVNYPQVIDAINFARVPQRAVGRYMDSPASTPAGVPSVVDPEFTASINKLNSLIESGIPAFISFDHLRETTNRVNQIEAEVSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |