Scaffold Ga0183826_1053032

Overview

Basic Information

• Taxon OID: 3300029792
• Scaffold ID: Ga0183826_1053032
• Source Dataset Name: Marine giant viral communities collected during Tara Oceans survey from station TARA_041 - TARA_Y100000052
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 622
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_041
• Coordinates
  • Lat. (^o): 14.6059
  • Long. (^o): 69.9776
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024116	Metagenome / Metatranscriptome	207	Y
F077328	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183826_10530322	F024116	AGAAG	MSGLVNEDWKDYLSIILFLIVILGGLIILGSCDSGWSVAGYEV
Ga0183826_10530323	F077328	N/A	EEEYTYTDQEIDTTTLQDPTWKESAFKLGKLGSPRWNNDGSKVLVKYELAIADGTHAEVIAVSGITALSHSEAIEEMKKDEWSGE