Scaffold Ga0183826_1014602

Overview

Basic Information

• Taxon OID: 3300029792
• Scaffold ID: Ga0183826_1014602
• Source Dataset Name: Marine giant viral communities collected during Tara Oceans survey from station TARA_041 - TARA_Y100000052
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1285
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_041
• Coordinates
  • Lat. (^o): 14.6059
  • Long. (^o): 69.9776
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020003	Metagenome	226	Y
F063605	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183826_10146021	F020003	AGAAG	VSSILNGNKFSPPGSRVPTDMLPNAIRYETARAAIFEQQGNFVRANDCLRLTRYYERRVTEECSSDT
Ga0183826_10146024	F063605	GGAG	VTIIRNEDIDDLLPSEYKEPWPPLSEEEIEAREREAEWEEYLASIPDAAERNRNLK