Scaffold Ga0183757_1036476

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0183757_1036476

Scaffold Ga0183757_1036476

Overview

Basic Information
Taxon OID	3300029787 Open in IMG/M
Scaffold ID	Ga0183757_1036476 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	971
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_018
Coordinates	Lat. (^o)	35.7528	Long. (^o)	14.2765	Alt. (m)		Depth (m)	60
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027159	Metagenome	195	Y
F027507	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_10364762	F027507	N/A	MNRHKKIEVETLSDTFKMSDKSTLIMIRDLFEMVKDNNELIQLLDKRIKILELRLKN
Ga0183757_10364763	F027159	AGGA	MSRRIENPVILINHWRWLQVNGTKQQAASCKLQAASLTRKNYNVIGESRRKKLCKQKKL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.