Scaffold Ga0183757_1036387

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183757_1036387

Scaffold Ga0183757_1036387

Overview

Basic Information
Taxon OID	3300029787 Open in IMG/M
Scaffold ID	Ga0183757_1036387 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	973
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_018
Coordinates	Lat. (^o)	35.7528	Long. (^o)	14.2765	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009753	Metagenome / Metatranscriptome	313	Y
F065109	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_10363873	F009753	AGGA	MLKAIYFALHFAMLMLGTVIAIHIDLWIGLAIAITFGVRFFFMLPNNKEGF
Ga0183757_10363874	F065109	AGGA	MKEDKLWEWDRTKIILKDPNGEEVVLSSLNLNDLTMENIFEDLEEYVQKKGGKLK

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