Scaffold Ga0183757_1026943

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1026943
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1263
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_10269433	F021207	AGGAG	MSKRFKQVNIQQFAILVQEVDISKYSQEEYVDIIEEIYMXXXXPNEEGNWKVHKSSATKEEVMELIKEGRVTWNKDVI
Ga0183757_10269434	F105326	GGAG	MEQRRNLTPKEHWELHQGLWNILGCDMQLKYRDRTTAIYVDNKAKLKYTYSTKGFIKWFPIPKEDKDANKS
Ga0183757_10269435	F013187	AGGAGG	MPTKAKIKKKPKKNTWVYIYGDEFLEIFEHFGFDFPNPDDRMKLKFVKYETKEMQDG
Ga0183757_10269436	F012581	AGGAG	MAKYTLYAKRVYYYRKDINAQDKKSAEKRSADYEADDNPERLFEPSGTEFYITSIEESDDEG