Scaffold Ga0183757_1018101

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1018101
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1749
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013152	Metagenome	274	Y
F051541	Metagenome	144	N
F062837	Metagenome	130	Y
F066269	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_10181011	F013152	GGAGG	MKRAMTKEELASLLVDKLTFITIDKKGNEKIWRTASDVDHSFLCDGWNIEDFE
Ga0183757_10181012	F066269	AGGA	MNKSQSLKLHLNCNFYPPLPESFKFKFVEVFEKYWEAGDIDCLQESLNKIGYKGSLTDYGFYNFLNGEDI
Ga0183757_10181014	F051541	N/A	MNATMNHELEQRKAVNPLKDLAKAVITRACLDSLGCITDSNYGGNTEKNILVDKAKRFFDPNIKSFRLWCDLAGGEPEYIRDLHNDLTYHYNCGKLKDFNTRVVIETLLKKL
Ga0183757_10181016	F062837	N/A	MTTIQLGILQLFIGLCAILVGGLIVYFVIQYNIKKEKEQKENERNKSPYEI