Scaffold Ga0183757_1007970

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1007970
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3235
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F004520	Metagenome / Metatranscriptome	434	Y
F023317	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100797012	F023317	N/A	MNNLNTTIDKVAMSEFDMHYYQLGENEQQWCHDEMVNNPKWLDPFWKQPGYISETDKLCNELGIFNYKNK
Ga0183757_100797013	F001740	N/A	MYNPNNPSNWSWSKAFDEMEKTVNQAELTQQIINHLLNYPGEANGLYMTLTKTQQDDVYEILNQIL
Ga0183757_10079708	F004520	N/A	MKLTNEEKDEITWRVVDSLYEKLANELEYELQEHESFPETNDAYMDLFNEMTIKIVKYMRSELFSPGTSEDLELYKR