NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0183757_1007772

Scaffold Ga0183757_1007772


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1007772 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3298
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012401Metagenome / Metatranscriptome281Y
F012463Metagenome280Y
F014127Metagenome265Y
F029745Metagenome187Y
F077179Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0183757_10077721F014127GGAGGMLERINNVKGRILIAGDESSWDFGFMESLEEQLTKRGSLSPRQEEVLQQVEGRWSDEALKSRASWADDWDKDKEAKFWIALQYYRKTGYYGNIVYKYLTTEGVRCAGSPSEKEYNKLVLNKYAAGVIRNIQEECKFPVGGTAVFRSAARAYHGQTCVILKHGDAEHVHSHAKGAKPIQVLPIGAAAPIWTEERWLKKAKKKK
Ga0183757_100777211F029745GAGGVARKAPQIGDVVKSRVTTESLAGYIVAKEGIHVWVRFFDTDLEAGDRWDVYTRRDTLEILSYANPR
Ga0183757_100777212F077179GGAGGVKQDDYKPGDLILFFHGNSRFEEGPEEFGWIVHRDHDDPSEPAVMVGFPGRPDNLLHYYDLELREWEKAGTIEVRRG
Ga0183757_10077723F012401GGAGGMIDGILSLEKAALQRLTEDRIASGSLGEEVEDMLSEAGIYWDTLNNEYFSIENFQRETFERLAQEYASHNDA
Ga0183757_10077726F012463GGAGMKIGDVVKLIAEPEMDWMFNYLDKTFQVLDFPTEMGVEVMMVGSRPEWVWLIGKANLEVTDENRGHREVEG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.