Scaffold Ga0183757_1004348

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1004348
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4961
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002281	Metagenome / Metatranscriptome	575	Y
F033955	Metagenome	176	N
F064201	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100434811	F033955	AGAAGG	MKIVRIDLQGACEPMEFKSKKALREYLIDFHLQDYHEEDEHGVEDIKLIKSFSLDQICDYFDWGYEQASEQKG
Ga0183757_10043484	F002281	AGGAG	MKINHKIVAEHLGVPLRGNETFDELLKIEQQVKEHKERQERIAEEKANIQRVDAQTKKYWGKK
Ga0183757_10043487	F064201	AGG	MEYIIIKRTKFEGSNISDMLSIQKTAQSLEEALKYTTALKMLETDKRVEFNVLINIDNAFKYVNEPLLLKDEVA