NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1004033

Scaffold Ga0183757_1004033


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1004033 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5238
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078604Metagenome116Y
F090494Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0183757_100403313F078604N/AMSNDFYIISTNSYIKNTSTFLDYDFYEKELKTSNNELKPHISDLNTNAIYYGKKCIKCTIPTIFISIEYKDLNKDTYLIDHEVLLYSEDMPNMEALENYKNKFNFNFASQVDDEVYVILDAFHNGYGCMCLSSGDY
Ga0183757_100403314F090494AGGMSTKHTKTFKAFQDKYNLSYQNFFTFTNPKVLKNEKISEIPTAILMLMNTPKACPAAGSCREVCLITSGNPIYLDNKIKCRIRRNNAFINDYSIFLRYLVVNCFRHYSKNRNVEKVGFRLNGVSDYAFEDLSVKLTSEDTDYIQKAFNIYIEPIRYGSVIEAVQKAIDLNDNKLIKNSVQFYDYTKRIDRNFDKAKKLNYHLTLSHGSKYDTFSKALELGLNYAAAFNLKKSQQLPTKFEYKGINLNVIDGDITDFRPLDNNNKTNIVGLHFKIVVNKDNAKKLDFCIA
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