Scaffold Ga0183757_1003613

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1003613
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5614
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F012401	Metagenome / Metatranscriptome	281	Y
F032335	Metagenome	180	Y
F073529	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100361321	F012401	AGGA	MMTEQMISLEKAALQRLTEDRIQSGSLGPEVEALLTEAGIYWDEIGNEYFSVDAFQVETMNRLAEEYASPENA
Ga0183757_10036134	F032335	N/A	MRENVSVKVSELKPGMLLRFKKPRVYKFLRDSGDDHWLDVGHATPNKTVKWAVVGQPLMIYLGQREMDAPSHYGNYRNVREVSIEGRKAWMWPDAWKYVEAV
Ga0183757_10036136	F005524	AGGAG	MIVGDKVQHYATGSVGTVIDSTYEISTPFQQMCVQWEDDKAPHRDSWERPDELSVIPHQTHNYTNPE
Ga0183757_10036139	F073529	AGGTGG	MKIGDVVILRKGRYNFAPQQGKPKWMFTDCLGVVTDDRGFVDGTAEYKVYTVDGKHSWEHIDDLRHAVEESK