Scaffold Ga0183757_1002489

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1002489
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7204
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F088913	Metagenome	109	N
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100248912	F088913	N/A	MSSSQPKYKVNDRVRIRHVLKTSNRYVIINGKPVESQRRKGIIKEITLKKNKCGAKIPHYQVXXXRPCLISQHRIELENEVS
Ga0183757_100248913	F006793	N/A	MTNTRSNQEEVVNRINYAADELAKGKRAMDISKKLASKYSVSIQQARDYVRQAKPVLTDSISPNDRAFIFSKVMNCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEVARKKKKYGDLDSLDNTDIPF
Ga0183757_100248914	F016820	N/A	MTKKEFSYIVFSSCGDSVQEIHGVYKDLKGASYGAMTALSTLFPKHGDEAKIIRCEIISTEEAQIEYDKANPKDIFEKCEDGYCPMPTLEPQQVS
Ga0183757_100248915	F012584	N/A	MKLKPKNSVLPENVFTLREDALPTLADADPWAKIMVWRKDVGWSIIQYSEAIQFLTMKHTHWTYTPTFPYNKSVTE
Ga0183757_100248916	F099447	N/A	MPKKDANKIINHCFSDLIKWTYDDAVFQLTQIFXXXXXXXXENDIVSSSTKEVIMNPEPNFNATAPRDVRDLADNLWHARKHISDAKKLISATALTQDDYDDRKDFQEAVVQRANVNFHFISITKYIDEMSEYTKGHIPPLK