Scaffold Ga0183757_1002298

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1002298
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7558
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F008022	Metagenome	340	Y
F011658	Metagenome / Metatranscriptome	288	Y
F022645	Metagenome	213	Y
F050307	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100229815	F011658	N/A	MKTLWQQLKPEIKQNLKDQEDKYPSLIKGIKIALKENYLWSHLSIGQARDLVYFTDCALASLSSYDWSYGEKFLIEDE
Ga0183757_100229816	F008022	N/A	MTKTELEAKIEALQAALDTKTQEQNAYRGQIDTLKKQLEDLNKPQLTPLQFDELHGAIEEAVGAFDFDDCDNYDMDFHIDYDNRIAVESMSFINADEIVRVIYNDISGLFAEADAPEDELSTQQHLNQD
Ga0183757_100229817	F004523	GGA	MSTEIRSAREALTVFKILGIKDVTTNRQRKNGTTVYELPIQQMWQTLEPKPLRFATYKAGYVRNVSEYNSSPYQINKTKKRPAGTDGYHFETVERTLIPNWEDRLIYLAKFIIKNYYQKTTYLMNDYVIKCLKEAYLRDYNNNPNNRLPFGDEVQVIVNGHRYNLTN
Ga0183757_100229818	F022645	N/A	MKDTNEIEKQLQRKADKYIEQKAKEMFEIHREIAQYLGGSLPTYIDYITDFSDYSKDLVANRGNYFTSSSPSAMQLKYEKDLAKNYKEKLVAKYTRELIMKLDIFE
Ga0183757_10022988	F050307	N/A	MNKKLKNRIKEFNKIKYPNGNSKRIIIASLKPAVTAASKNK