Scaffold Ga0183757_1002261

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1002261
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7631
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007259	Metagenome	354	Y
F007344	Metagenome	353	Y
F032626	Metagenome	179	Y
F068728	Metagenome	124	N
F085565	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100226111	F007344	N/A	MTSHEQRAYDALAMKLTEAGYAYENTSWANDATASISVTCMRVVQSEDEIDKVMKYEFQIYIPNCDYWDPDNEYFNTYALTDEMTGHTFDFDRADEVVEHIQDCTRDIIFTN
Ga0183757_100226113	F032626	N/A	MNKENLQTKVEALQDNLKVKHDELTEVQEQLNVARRELANANKPTLSQDTMVDLVSRLQDIFQDALNDADTNDLSPEFSIGYGNEVVLECIDMSMIEIHDCDIESVFEEVFNIVNEESDN
Ga0183757_100226115	F068728	N/A	MKANLYERLTPECKEALQYNSKRWHGATNKIVSVLSSHKFWSDLKVGDVNFIIQFVDLPFAKITSGTFAFGENIIKDD
Ga0183757_10022616	F007259	N/A	MIFDKELRAEVKIQRDAVHQLLKYHLPKCELTLIGDSEIQLTWHSNPHCIRETLLTCSMYGDWQFEEHQWESFDNYHYSTDLKLDYTSPANDIVNALMKLL
Ga0183757_10022619	F085565	N/A	MVCIQRLLLRTRIIMYLTILNYDDIRGNRVITFELPEYTRGFQVESIEEYISVTLGFNTGNIDWQTHEYLPELVELHNQEYA