Scaffold Ga0183757_1002195

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1002195
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7782
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002330	Metagenome / Metatranscriptome	570	Y
F035483	Metagenome	172	N
F043344	Metagenome / Metatranscriptome	156	Y
F049689	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100219511	F043344	GAG	MGDRVSISFQQKAEWYVKRKKEEHMEQSPALFHHWGGTHFPKFAFQWFKHVKAKYAKHGGDPFTRMEPRNLMVQFIAHLRNHEELRYDSFNKKTKGYDTDDQLLSYSIYLGKDSMDGDNSDNGHYTIDVDNVKMYNDKGESIE
Ga0183757_100219513	F035483	N/A	LDKGVDKFGKSIGADKVIARLKKAEEEKRVASRQAYMFFNAKASSIVSYNKAKEYKFDRDDKETISVKDCISQLNKWAEKQAEQFAETTPQGQRLAFLKALSESAKDKVKEASVSDELKDTLDNLFKMVGVAWERKLPALPRK
Ga0183757_100219515	F049689	AGGA	MQDKYFVVRVWFFEYDKKDQYQYQIVSDRAYPMDKAVDIKMAQDIMNTNENISFQIQKVNLMDLGKSKIAS
Ga0183757_100219516	F002330	N/A	MFQFPISMIILDIMLKYINQINKALKIGDEFTIYYAPTYTKDGQEQTSIYDAHQYEVNVRSAKWDEGCKINKTGSLTYFDVDKNSHRTAIQTLQPIRIYLNKQMYVWKEVK