Scaffold Ga0183757_1001844

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1001844
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8735
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029713	Metagenome	187	Y
F033766	Metagenome	176	Y
F036656	Metagenome / Metatranscriptome	169	Y
F040580	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100184418	F040580	AGG	MTHKEFFNVLIGKPPAEIELEIEIRKREVEALPEFVMKQYCLDLVKENKLQDFLIMAAMQRITETETKLLRVEMALHHHTKNLRQKKKLTLLDRFKTMLSVFR
Ga0183757_10018445	F033766	AGGAG	MSDYPYNLTAIATHLRELTKSIAKKLDISEEDAWDLCIEKLEYKFSSMKREDDQ
Ga0183757_10018447	F036656	GAG	LEYLKGACIFLSDEDEGRYIKDVIIDLNKHSLILIDENNEGMYWESLRNASIQFQGGR
Ga0183757_10018448	F029713	GAGG	MTSNNHQEESLKAAKRAEIERLWFNQEATNKELLEAYKALDVKEEDKPN