Scaffold Ga0183757_1001725

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1001725
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9060
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F029779	Metagenome	187	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100172516	F105326	AGGA	MEQRRNLTPTQHWELHQGLWRMLGCDMKLKHKDRTKIIYVDKKRNIQYTYSALGFIKEKSYANKKN
Ga0183757_100172517	F013187	AGGAG	MPTKKIKKKPRRNTWVWIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETREMQDG
Ga0183757_100172518	F012581	GGAG	MAKYTLYAKKVYYYRKDINAQDKKSAEKRSADYEADDNAERLFEPSGDEFYITSIEENED
Ga0183757_100172519	F029779	AGGAG	MSDNIKTKYYIEKYKQLCEALVGIDATERYTHEDILSYVYNLKDTEEKFYDNKN
Ga0183757_100172520	F008925	AGGAG	MTTKTKPKIDAVTLNLINKLKKIEDTINEGAWEYIHLGDIIRLQDASQEAISHFDLRKEGGIHDYGADKGKYQQFWYSDYVCYTDPKAFDPSKVEEEDDE