Scaffold Ga0183757_1001578

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1001578
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9625
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052545	Metagenome / Metatranscriptome	142	Y
F071138	Metagenome / Metatranscriptome	122	N
F089399	Metagenome	109	N
F103098	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_10015782	F103098	GGAG	MRDLVNLGIEFRQDTATSNVVDRTEDCGNGFGWSIIEWPNDSRAYCRYEFAVLRDGNICYDSGVTEDVVRGDWTMMEKLKCYVTDLNPDRLPS
Ga0183757_10015785	F071138	AGGA	MFKVIVSDVECFGKFGYFTTRSVAFGKSPKQAWANLRKRGAHTVSGGHPEGYGGVPVLQMRRVEKDGEMLSEVWD
Ga0183757_10015787	F089399	AGGA	MNFNEICLDAELTRDEIYGLAVGDETIFYTQDDEDIFKQEQESEYRRLKRIKQENAENYRKQVDADGIFQYNGHTDEVSLHSNQQAFVGAMVKEGLIEFDDKF
Ga0183757_10015789	F052545	AGGA	MEKISVWAVLFRMSTESSVMIRTPFDAKTFKNSPDDQLDAGAWCLGRMGGSWVPAMFICGTQSEAEGIREELLERMHREE