Scaffold Ga0183757_1001491

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1001491
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9938
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (51.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021321	Metagenome / Metatranscriptome	219	Y
F033839	Metagenome	176	N
F038198	Metagenome	166	Y
F043451	Metagenome	156	N
F067840	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100149110	F038198	N/A	MTLEKVTLKNVRVTINFDIDLDTLKRYLETKERDFDDLMAIYDMISIQSDRLNEQGEPENIRAYFDLDPETFNLLEQQVKTDLKKSYVTDSDHPHLRRIK
Ga0183757_100149118	F067840	GAGG	MAKKFGKRYMQTKKTIYAAYDILSLVVIILSFDKLLSSKSRSVEPRQVARLIEKLPRVKKILYDSAPWWAFDDMDIKSK
Ga0183757_10014913	F043451	GAGG	MTTIQPWLYPNNPLSVDRVVYTPTLSAHILEYQEEMIDAEGNVYWKTVDSTTFGGSTSVKEFLEQMKDFYETKSCRKDKMQS
Ga0183757_100149131	F021321	AGGAGG	MNRDYMANMLFNINDVVETIQGHSINDDIIEDYHESQFDEEPKTLMDIPKDREGSSITIGDCLLDLQTHINELHDYFSEVSK
Ga0183757_10014914	F033839	AGGA	MNNMSPITRAFLTVGIGVFIGIIPVFMIITSLSTTAIKLCGRYGSDYTIVDLDTPLGTIKRCVAKN