Scaffold Ga0183757_1001235

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1001235
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11372
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005026	Metagenome / Metatranscriptome	414	Y
F018706	Metagenome	233	Y
F026871	Metagenome	196	N
F044468	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100123510	F044468	N/A	MLGIDLNVGVPKPFTSGGTPPSGPDGVILSEAGAFLQTEDGNFLAFD
Ga0183757_10012352	F018706	AGGAGG	MFDRVSVLGMSGTAATFGLSTIDSFLGIAVGLVTLVYMSIKLYQEIRKKK
Ga0183757_10012353	F005026	GGAGG	MFELLTLFLTGGGSAAMGSILKGVFGAITDARQQKYEMEMARECRNNQFAVQFQASLNTGPGGAFTRATRRMLALIGMCTLSFITCITTIYPSVPLVSTTNITGEGRREFLFGLFSFPAEQAPLVVTTGHIALFEATVVLPLIIGFYFTPGGRR
Ga0183757_10012354	F026871	GGA	MFAGVGVALSILAFFIKRNKWEIDDMKERLRQIEISDAGQVKDLEHLTKLAEDRREDIKNLFKRLEDK