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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029787 Open in IMG/M |
| Scaffold ID | Ga0183757_1001104 Open in IMG/M |
| Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12272 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (84.21%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea: TARA_018 | |||||||
| Coordinates | Lat. (o) | 35.7528 | Long. (o) | 14.2765 | Alt. (m) | Depth (m) | 60 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F052868 | Metagenome / Metatranscriptome | 142 | N |
| F075313 | Metagenome / Metatranscriptome | 119 | N |
| F085682 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0183757_100110417 | F085682 | AGGAG | MSIDFRGIDLSKYEKLIRIGTLTEEYEFAQDELHAILIRQRSKLYRESCDTEREIFVLLDRIARELSRRRVASDERAEFMRRLP |
| Ga0183757_10011042 | F052868 | AGGAG | MTQLATTEATDLVIPDNLDKLSVDELAIMLGQKDGMESQSSGDSFARLSINHSPEDDAGNTLPRGHFALYNPDTKQKVFGKDVTMRVFVRRFMYSLWDNEQGAYSVRSTQQAKLNDLFPDNEGGFKCGKLTRKEIEDLGTESPEAAASAMVKCNQVLYGLVTIADGKTATGEEAPVENIPVVFYGKGASFVPISQYFKDLDSKNLLTWNVNSKLHSVRHKNGATIYYSTNMTVSDTVDFSKEDKVLLQAIADSINSYNLRVSGEHTEANNGLGADAIDLAAVEA |
| Ga0183757_10011049 | F075313 | AGGAG | MKPHTAPTKRFDRELFNANDPQTRESAKKLLPPKLKEILKLDEEPILEDNPKAYGIDLLCKKHNLSVEVETKHGWGDGKFQWGDMHIPRRKFRYTKVDGEVFFVVFNTNRTQAGIMTKDSVKKERVVNKFNRLSRLHEDYISVPVEEIIWV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |