Scaffold Ga0183757

Basic Information
Taxon OID	3300029787 Open in IMG/M
Scaffold ID	Ga0183757_1000541 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029787 Open in IMG/M

Scaffold ID

Ga0183757_1000541 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20286
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (69.77%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20286

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (69.77%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_018
Coordinates	Lat. (^o)	35.7528	Long. (^o)	14.2765	Alt. (m)	Depth (m)	60
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_018

Coordinates

Lat. (^o)

35.7528

Long. (^o)

14.2765

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005431	Metagenome / Metatranscriptome	401	Y
F017045	Metagenome / Metatranscriptome	243	Y
F017558	Metagenome / Metatranscriptome	240	Y
F032821	Metagenome	179	N
F035085	Metagenome	173	Y
F066702	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100054119	F032821	AGGA	MIQVKLDLYELMASSQTGLLRVFESIRLKQSWGYGFKGDLNDQISKSISGSCSELACSKYLETDYTHHVNHGSNPDLLYHDLHLQVRSQRPKENNFLIIRPKSKKNELYIFIIDKAPIFEIHGFVNSSHIIGTKKYLTDLGKKDRPPCHAIPLDQLTPIKLLKDGNWN
Ga0183757_100054121	F066702	N/A	MRLVREIRYRGYKAKVVKLTKKQAKNGNMYGCYYPDTSTIAIQENLKKLTLLDTMLHEIGHFIADKSKIRLANLGEEGITSFIGSEFGKVFLQNPKLINFIKRCVAQ
Ga0183757_100054123	F035085	AGGAG	MIKEIQDKIDNYNPINEKDKIKFEHIIKNMELITRNHLTNVATLPNQKWQKEIESTHWDKRIKTYFLLYVDLLGDTHLGDIKNVFGTLVKTKKGYSYTKKKCPRVPFHSDCLQIALYIKAFPKKIPFLTYASDSDYVIFTPDNCVELRQDNLDKYYEELITYQMCWEKKLELANGDMKTLALLCKPDFSEIRKNGFWWNGVNYEQIKRFKRFYDA
Ga0183757_100054130	F017045	AGGAG	MANKSNSLTRRYAKLDKYHAEIMKPAKGNKRRQCVHSSVAFKKYVKTFRQICLVENEDAKFMYL
Ga0183757_100054132	F017558	N/A	MFFIIFKNKKDNLTSYTNQIFQTEDEAKDYAKRSLKRKDTWEVVPYDXXXX
Ga0183757_10005416	F005431	AGGA	MFDYEDGKKGYSAIIYVMESSKSVVVHFGGFNDIHECQNFSHILMDDLGIESLLVPKGVTLH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183757_1000541

Overview

Ecosystem & Geography

Associated Families

Sequences