Scaffold Ga0183757_1000428

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1000428
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23471
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100042815	F018815	N/A	MNVSLEKVSNFLKPFLLQDIVIRTNKKVLKKGKFKIFQVKQYYINLTLEINGANKNYEIPYPFKMEYDDGNGILNYHLSSFIPLNQMTRVKFLDSSSQSKLYDNLVYILPSDGTTLK
Ga0183757_100042816	F018622	N/A	MIVQKATLDSLLSNNVLEIRFPRRIAKPGLAATRRMLCTNSLDLLNSVNGRISLNYFAPKGPRKPYLGPDNLSVAWDVMMQNYRNINCNQVDVIQEIPADEDFWVYFNENIYPLSQQQKFNFMNS
Ga0183757_100042817	F014794	N/A	MAMASIDNLAPTRSLIDLTQKDKGDFGLDDFDLDFIFDDILLVEYVDESDDGDEIIRNGIVVPTNALTKAWRKGRVVLAGPDAKHAKLDDIVIFPNNMGVSISNITISGGRKVNKAIFLNEERMFGICKPKDDSTKSNS
Ga0183757_100042818	F008105	N/A	MNFFQLQNKLFYSKKENAGVLDSEGEQAFVPFLFNRWLSFYNKELPGFVNETLNKFGSIFDDKQEAYKLYYYLIPRLKWQRITYIKKKKKEEDEVEGLNVIAKNKNISKRELQQYVELEKILRK