Scaffold Ga0183757_1000374

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1000374
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25144
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007093	Metagenome	358	Y
F030286	Metagenome	186	N
F063608	Metagenome	129	Y
F069320	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100037421	F007093	N/A	MIKIWLLISMISMPGMPSVKHTAELYFDQEKCEARRIVMENSIHDMAAEQGINPVYTQTWCLESNMFVMKAT
Ga0183757_100037422	F030286	N/A	MIKKVNITAVIIAGITVIYSYGMLVNRVVANENKIKDLDMLRIDARLSVIEANVVAINDKIDQAIK
Ga0183757_10003744	F069320	AGGCGG	MPLRLPDSPVKSIRRCFKCNNLSIEFWNPKYNRTYTVEEWLTICEDGKESLRKILRPIVEDPKWFFD
Ga0183757_10003746	F063608	GAG	MPKKIKLKERLLREYVKVSKTAPREPRSGREMFIRLRWERLRKILWRRYDYMQSL