NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1000370

Scaffold Ga0183757_1000370


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1000370 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25228
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (30.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007974Metagenome / Metatranscriptome341Y
F052252Metagenome / Metatranscriptome143Y
F098205Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0183757_100037019F098205N/AMLDKKGRLKEKPISNKLKTAGYTIKRLRDNGFVVLKMFNAYNNQDPRRWTVLIDPGRTSVYMTCFHNKENLNEILFEIDDGGVKFNRGFFIKTDSVEVLISALIEKGIPSDPSGNPFYKA
Ga0183757_100037028F052252N/AMSNYNPNDFVNPTQVRSPYTGETATPSYNSFEHQGNTYQQAVFSDPVTGHLIKKGIVSIKDKEGKIVADYNSVLGSSNNVTQRSLDNL
Ga0183757_10003704F007974N/AMSKKLKPGADIRAENPSKRKIMGRSSGKLVFNETVQRMVTPKIDKAIENNKEKRK

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