Scaffold Ga0183757_1000321

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1000321
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27439
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (44.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018644	Metagenome	234	Y
F038462	Metagenome	166	N
F047368	Metagenome	150	N
F050008	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100032112	F047368	AGGAG	MPTRCEAIKHAHTEEEALKHLTTGNSKKGYKLKRSGVSIEVIAVKKLPHTI
Ga0183757_100032117	F050008	AGG	MNQVMEETIKVNFNETQLKLVMDLAEDFAPFVSKVESGTSTTKNNYGAYGAMLSKISKGDRKLALIFAYALKIAGANAIGISDAIDAFFPEN
Ga0183757_100032140	F018644	AGGA	MIQYILDNYKDNLLGMLFAYIGVLSIVVMFLPKNNIISRAFKEFASICTSIFKK
Ga0183757_10003218	F038462	N/A	VALDFKQPQPHQPNNNMTIEVHTAEIDPHTEVFALDVDDVSLQRLQYGEVGSPYPYVKVADVAKALQPKAPRNDSDLLDLIDNQGYTYCFFASEGEVTRSKHRCVAIYSPTGQQLTGVAEGFENVRDALGYVLDMEETK