Scaffold Ga0183757_1000279

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1000279
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30424
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (82.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003637	Metagenome / Metatranscriptome	476	Y
F028038	Metagenome / Metatranscriptome	193	Y
F029926	Metagenome / Metatranscriptome	187	Y
F030768	Metagenome / Metatranscriptome	184	Y
F050424	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100027913	F030768	AGGAG	MAFVNLKDLKANVGGQLRLTLNSAGVYEEKEWQGKKFNTFKYEVIQDGTISSLDATDSLHRKLMSISKGNDFLLSWEQFTTDSGELRNYWKVEPVSKDSANPVFENVKKSINEFDQKLQADKAVKQAVETTNTTYTNGARMGMIFNNVVKLYIANDMVWTTDEFVNNFKRVEAWVEACENPKAIPQASKPNEPVAEESVEIKADDLPF
Ga0183757_100027931	F028038	N/A	VNKLANLDFYNKEIENIQQQLIDKLDNLVVGLGRVTDTELMQIAKQIDFFAEMETLGFTKLMNRVGKTFDDEIARVFAELSKRELGQVSAASIDALRELKNFEMTYLTNGVRQYSDQLKTAMLRGIITGESNIQIMNNINSTFGVGTYISSSETSFLINDAFSRFSNTSRAKAFEEFPEIKFQYIGPSDGKTRDVCQRALQEPPLTREEINALGYIDFGNRGGYNCRHDWVRV
Ga0183757_100027932	F029926	N/A	MRLDQVVKPNSKVMTKLAQDAIDKITLDASKGKFQNGRSGYSYKNDTYRKYKANSMQGKNGKLKAFRNQSTDTQTAFVNMKLTGRTLRSMRGSGKTDTAIITYDRGEIVLGNQKRGYDIYDLSNKNKEFIAERFGKELLDRNIKKYVSKTTIIK
Ga0183757_100027937	F003637	GAGG	MAIVIAEKVQEQAQSSVKMVEIKHTRTMQDASGKDVEVVDFVETKQIDQAISLCEAHKANLESQLTECEAELADYIAIRDAE
Ga0183757_100027948	F050424	GAGG	MGIEFENIYKDRVIDTIQKLLKQNLASIPVVFDEHRGQESFLIIPEADAFVDYASNVHIREFTTTINYQLRKGGEYTKENQLNRLTMIAEVVKRLLFDNRNYESGNITFWYGGLVSSVEYTRDEEDETISNVIITFQCNTNEVIS