Scaffold Ga0183757_1000228

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1000228
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33785
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (60.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001029	Metagenome / Metatranscriptome	801	Y
F006642	Metagenome / Metatranscriptome	368	Y
F040332	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_10002283	F001029	AGGA	VKYYNKGIAAHLEAILKLLDDDHLVFENLQGQGPIDIITVNKETGKVTFYDAKSDRTSRHKKRPQSQIQKKLGVKNIYVNLHKRTVRLEGRVEKL
Ga0183757_100022835	F040332	N/A	MYRTPTAMDTQDEVLHFAAKWIKGKVKRASNSQVQKTLSMDVAIDYLNANPHLINQYDIPFKYRPKLPEKLEFIAYLKGNTSIKELISKTDITKTKIEHWFRKDKCFSYPSITDWNLIKPHLKELKFNYEMTYEEDKDWK
Ga0183757_100022836	F006642	AGGA	MSKYIKDKYQNVTAISFKAYDNDLIINFTGFESEEDVYEFCEFVFHKIHMNSNFGEKPPTVH