NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1000159

Scaffold Ga0183757_1000159


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1000159 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40295
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (78.85%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001521Metagenome / Metatranscriptome679Y
F003976Metagenome / Metatranscriptome459Y
F008134Metagenome / Metatranscriptome338Y
F010318Metagenome / Metatranscriptome305Y
F010571Metagenome302Y
F028971Metagenome / Metatranscriptome190Y
F038195Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0183757_100015913F010318AGGAGGMNVDSDKPKYIECIYETNITFDLEELSIEWDKVKDYHVKWGTLYVEFKDGSSVQHDGITDIGEIDYKWAEKENILTEDWSLVEGLN
Ga0183757_100015914F003976GGAGGMSRLYNDYYFEKEDVLHTLEKLEISVRLLNVWVNEPMGLENAKYVLEKNANRKFDWFDRNMVKELLEEEVI
Ga0183757_100015916F010571AGGAGGMSMNTRQAIYTETLYEGFYEKHYKELSKTSDDVEWIENEAMRLAEIDLDNFEMEG
Ga0183757_100015917F038195GGAGGMKRHNDYYEYKTISFSFFKKVANKNEFKKEWVSVRCQEDIMKQQPHNVEIRRLKKNV
Ga0183757_100015924F001521GAGGMKLWITEHVNEDGPAIGPYIKADTVAQANRIAIQYGLLVLGEIQELEHEVELEKKVVH
Ga0183757_100015926F008134N/AMPQLGSNEKPVLMSSKKNKGRLYKPSDGGKGSAPRVNIHSKMYRDNWDLIFNKGGKDANKEES
Ga0183757_10001594F028971AGCAGGMVEIKDTELTPMTKEEFRAWEEYVIKYNHDNKADQIAYEVVWNKDEYKVKLLDLRVDKEGQE

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