Scaffold Ga0183757

Basic Information
Taxon OID	3300029787 Open in IMG/M
Scaffold ID	Ga0183757_1000159 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029787 Open in IMG/M

Scaffold ID

Ga0183757_1000159 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40295
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (78.85%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

40295

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (78.85%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_018
Coordinates	Lat. (^o)	35.7528	Long. (^o)	14.2765	Alt. (m)	Depth (m)	60
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_018

Coordinates

Lat. (^o)

35.7528

Long. (^o)

14.2765

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F003976	Metagenome / Metatranscriptome	459	Y
F008134	Metagenome / Metatranscriptome	338	Y
F010318	Metagenome / Metatranscriptome	305	Y
F010571	Metagenome	302	Y
F028971	Metagenome / Metatranscriptome	190	Y
F038195	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100015913	F010318	AGGAGG	MNVDSDKPKYIECIYETNITFDLEELSIEWDKVKDYHVKWGTLYVEFKDGSSVQHDGITDIGEIDYKWAEKENILTEDWSLVEGLN
Ga0183757_100015914	F003976	GGAGG	MSRLYNDYYFEKEDVLHTLEKLEISVRLLNVWVNEPMGLENAKYVLEKNANRKFDWFDRNMVKELLEEEVI
Ga0183757_100015916	F010571	AGGAGG	MSMNTRQAIYTETLYEGFYEKHYKELSKTSDDVEWIENEAMRLAEIDLDNFEMEG
Ga0183757_100015917	F038195	GGAGG	MKRHNDYYEYKTISFSFFKKVANKNEFKKEWVSVRCQEDIMKQQPHNVEIRRLKKNV
Ga0183757_100015924	F001521	GAGG	MKLWITEHVNEDGPAIGPYIKADTVAQANRIAIQYGLLVLGEIQELEHEVELEKKVVH
Ga0183757_100015926	F008134	N/A	MPQLGSNEKPVLMSSKKNKGRLYKPSDGGKGSAPRVNIHSKMYRDNWDLIFNKGGKDANKEES
Ga0183757_10001594	F028971	AGCAGG	MVEIKDTELTPMTKEEFRAWEEYVIKYNHDNKADQIAYEVVWNKDEYKVKLLDLRVDKEGQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183757_1000159

Overview

Ecosystem & Geography

Associated Families

Sequences