Basic Information | |
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Taxon OID | 3300029787 Open in IMG/M |
Scaffold ID | Ga0183757_1000159 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 40295 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (78.85%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea: TARA_018 | |||||||
Coordinates | Lat. (o) | 35.7528 | Long. (o) | 14.2765 | Alt. (m) | Depth (m) | 60 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001521 | Metagenome / Metatranscriptome | 679 | Y |
F003976 | Metagenome / Metatranscriptome | 459 | Y |
F008134 | Metagenome / Metatranscriptome | 338 | Y |
F010318 | Metagenome / Metatranscriptome | 305 | Y |
F010571 | Metagenome | 302 | Y |
F028971 | Metagenome / Metatranscriptome | 190 | Y |
F038195 | Metagenome | 166 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0183757_100015913 | F010318 | AGGAGG | MNVDSDKPKYIECIYETNITFDLEELSIEWDKVKDYHVKWGTLYVEFKDGSSVQHDGITDIGEIDYKWAEKENILTEDWSLVEGLN |
Ga0183757_100015914 | F003976 | GGAGG | MSRLYNDYYFEKEDVLHTLEKLEISVRLLNVWVNEPMGLENAKYVLEKNANRKFDWFDRNMVKELLEEEVI |
Ga0183757_100015916 | F010571 | AGGAGG | MSMNTRQAIYTETLYEGFYEKHYKELSKTSDDVEWIENEAMRLAEIDLDNFEMEG |
Ga0183757_100015917 | F038195 | GGAGG | MKRHNDYYEYKTISFSFFKKVANKNEFKKEWVSVRCQEDIMKQQPHNVEIRRLKKNV |
Ga0183757_100015924 | F001521 | GAGG | MKLWITEHVNEDGPAIGPYIKADTVAQANRIAIQYGLLVLGEIQELEHEVELEKKVVH |
Ga0183757_100015926 | F008134 | N/A | MPQLGSNEKPVLMSSKKNKGRLYKPSDGGKGSAPRVNIHSKMYRDNWDLIFNKGGKDANKEES |
Ga0183757_10001594 | F028971 | AGCAGG | MVEIKDTELTPMTKEEFRAWEEYVIKYNHDNKADQIAYEVVWNKDEYKVKLLDLRVDKEGQE |
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