Scaffold Ga0183757_1000148

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1000148
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41554
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (29.17%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015933	Metagenome / Metatranscriptome	251	Y
F022761	Metagenome	213	Y
F025153	Metagenome / Metatranscriptome	203	N
F028800	Metagenome / Metatranscriptome	190	Y
F031698	Metagenome / Metatranscriptome	182	N
F042580	Metagenome	158	Y
F047319	Metagenome / Metatranscriptome	150	N
F052892	Metagenome / Metatranscriptome	142	Y
F060424	Metagenome	133	Y
F066151	Metagenome	127	Y
F070015	Metagenome	123	Y
F078595	Metagenome	116	N
F083396	Metagenome	113	Y
F092752	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100014814	F042580	N/A	MARPKLPEIVKLKNRVLKRYPGASCLQDSYGMYYVYWNEENLNDIFLLDNTNSEIEAWRQASITAKHEQHINRTHPMKKLISEEQKNLNKERITRRIKKI
Ga0183757_100014815	F047319	N/A	MYKQGETVIVTENIDKKTKEQRHEVGVIMKAFVHKKQNYYDVLLERRSALSYLNTSRNSKSHFINTSLTGKLVESDQIQTTIPFKYMLDNEQLPIIIA
Ga0183757_100014826	F025153	N/A	MIKLKDILIEQIGFRVPGAPKQKNIGRKTRQEFGKFFNNFEAGNTKTAISNYAEQIMNSDAPDDIKKKASEILNEMEKVAIDIQDELHTRQVSDDDVAEKLFSYVNSEMDAEESIEFEQLLWYDNQIDMSINSGMIDNAVAILGQLLQQLEFIRGFILQEFPQISTIGFKR
Ga0183757_100014837	F015933	N/A	MAKKKVNDTKANIENGMFFKFKEVKYKSYTNDVYKVETSKNGYMTLHRHHIHSKTGEYIPVDLVVVRRIGENSLDYYKYDMFGKKTRGRIHYINIDSFFYVVQGKDGKAYTKIEKALAV
Ga0183757_100014844	F092752	N/A	MDSYYAMTAAKRNGTTLEEEMNKRGYVKDYYIGSGAWHWKKSLNFSGKKVDTH
Ga0183757_100014846	F028800	N/A	MKIEIIDGHDGFEREVTGTYNLDDNNVYEWELYTYDGLTSIMFIDCEAKFNLEDEDECEQIGLTEEEGERIFDEILDFVNDNGYDFIGEEFE
Ga0183757_100014850	F066151	N/A	MSNEKELVGWELVNFLMQRFNMTEDEALQSLAENVGNVELKK
Ga0183757_100014851	F060424	N/A	MKRKEILSKIEKTYSKIYQFTDRMDDEALNVLDQHTDRYNLADEDAILMEALVDEYDPINLSKDTLSCLLDAYKDALADLRCE
Ga0183757_100014855	F078595	N/A	MKSKNGIILSDFEIVENNLLGVNKLLVNKFLELFSSDPDNMCNSKYVNKLNNFLNEINSNYICVNKLSVNDEGEIFWKFKLK
Ga0183757_100014864	F083396	N/A	MKNQDEYHETSTAETLQKFLYVLRNVFDGDADAMLSEIEQRSAEAEDYETAAQMRDVRKR
Ga0183757_100014868	F022761	N/A	MKIKKYGIEITKPWSKEMYAHNNEVLKEFVEEVKAKWYCAYLDSENLYYRDGRADEDELDFEESEFNYNANAIMLDVQEAVTISGYGSGYTIYDVEKDVHQELNAMPYWRAKEVAEDLSLNLDKEFIGLG
Ga0183757_100014882	F031698	AGGA	METNMLLGILIGGSTVALLAFFAYRVKVSFDRVTRNHEDLNTDIYSSLDQLKNQVDQMIENVDRSLNDRVDDVYRTLDSRFDKTESRIISEVQKKK
Ga0183757_100014886	F070015	GAG	MKLKALIIKSEQPSEYISTPDGQVKLCKSGPLPKTNFVVGPFNPAKASDRIPGFDRVKYYKEYITRLLPDSMIKKY
Ga0183757_10001489	F052892	N/A	MRPTNSLCFLPTIEYQNKRFNVRRLVKEDPNENIEFWKSIVDHDIVLRKDGFLWFLIEITEVEIIEE