Scaffold Ga0183757_1000107

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1000107
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52466
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (92.98%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013154	Metagenome	274	Y
F101273	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_10001071	F101273	N/A	IPKRELNQNSGKLAVIRLIEEYPQTTMEAVKADLNKYFLTGVSRGLVFTTSELKGFLTLNGAVTDGIGTGVTNGLIDFATPAAQATAAESVQGVAKSTLISHFNQFEDVTSTSGFSANGLHPLRRIYRKCAHYAGGPGKGPDLVVMDDDTYTLYDQNILQNNVRINLVDDKTDKTNTMALTLGLAKVHSSIDLDKDDSAFSGTAAADGVSYFLNTDYIEFPMLEAPNISEFKERVGDQDVVTALFAMQGNMICTKLPAQGAVTGTAGTTATA
Ga0183757_100010721	F013154	AGG	MKAFIDSLFCSQKRISWRRLAVLALGTALLTADLLASEQWLYLALAYIAGDSAEKVMAAIGLAKK