Scaffold Ga0183757_1000041

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1000041
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73431
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (29.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F012280	Metagenome / Metatranscriptome	282	Y
F099888	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100004123	F012280	N/A	MPSKLKPSTKEYQKDSRGRMTQKWKWIHYTPSNTSTKELKKMYESLSFRRKKNIIKRELIKRNEII
Ga0183757_100004169	F099888	GGA	MRKTYLVPRSNVGIGGFITVSSGVRYHVPSWTVVEEDTSFEDIIMEKKPFEELFEEKEEKVWKFISARSGEEYIVRYNARNELSCSCWGYIAHRNCKHIKEVKEKL
Ga0183757_100004199	F001222	N/A	MSNIKEIVREVINENAKVNFAGHQFMLKVDVNEDPQKKGVKIQFLPTEFGSITKTEQNDIAIELEQRLEQGLNQYDFKVERDRNLKDKTIIGFFIYIEYFDRMVRAALKQTNPNSSPAADDNEEI