Scaffold Ga0183757

Basic Information
Taxon OID	3300029787 Open in IMG/M
Scaffold ID	Ga0183757_1000001 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029787 Open in IMG/M

Scaffold ID

Ga0183757_1000001 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	191359
Total Scaffold Genes	264 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	232 (87.88%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

191359

Total Scaffold Genes

264 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

232 (87.88%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_018
Coordinates	Lat. (^o)	35.7528	Long. (^o)	14.2765	Alt. (m)	Depth (m)	60
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea: TARA_018

Coordinates

Lat. (^o)

35.7528

Long. (^o)

14.2765

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025173	Metagenome / Metatranscriptome	203	Y
F030248	Metagenome	186	Y
F075436	Metagenome	119	N
F098071	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_1000001144	F030248	AGGA	MKLIIESFRKFLTEQNFISDIPLEQDEEGNIILYHVSGAEDIEELDPEVAARNLKNYTTAEYRSWDRPRVFFFTRLGQEDTGIGQIQGVPYRVRLRPNQLYPIMDDPAGLSSKQMQQEWMTENVPEFAEKIGEAKKCSSDEKYNQWHICSKTSDSDGLYYTEKRHAGKVFLVDDPGFHHLKPNTYEMVAKLAEERYNSIGFIYPQSGEEKNQIVALWRKAPAEKLDKEFY
Ga0183757_1000001205	F075436	AGGAGG	VSEDVKNYINNVLDERRQEFGGKAVCPFAAPELKANRLMVAEVGDKSLLELIDELATSDYESALFIIKKDIPAEQTKKFQHFVNRLLRQRGLKDYKNICFNPNDDVEIEGYNPRSLAPYFMVNIADKKVLSKAHRALKKTNYYDKLPDKYRKFLNLKDK
Ga0183757_100000166	F098071	AGGA	MGIFIVTATHTDDDYKRPHVSSETAMATSHEDAVVRAVEFYLERLDGGYSFDYHNPSGFNKVIEQHRNSPQTLFSALYDYFESNPEGMFTGEFVPETLNVTISENEHVPLDTKPILSMVDEVSRYIREEM
Ga0183757_100000179	F025173	AGGAG	MANGYALFKSLHPVGGLYRYKAPYAPQGLNPWSDGKVYLLTKWERPEGIDKKSPLLNAFFLVNGTEHCVDISFFKYLKAVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183757_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences