NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1000001

Scaffold Ga0183757_1000001


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1000001 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)191359
Total Scaffold Genes264 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)232 (87.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025173Metagenome / Metatranscriptome203Y
F030248Metagenome186Y
F075436Metagenome119N
F098071Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0183757_1000001144F030248AGGAMKLIIESFRKFLTEQNFISDIPLEQDEEGNIILYHVSGAEDIEELDPEVAARNLKNYTTAEYRSWDRPRVFFFTRLGQEDTGIGQIQGVPYRVRLRPNQLYPIMDDPAGLSSKQMQQEWMTENVPEFAEKIGEAKKCSSDEKYNQWHICSKTSDSDGLYYTEKRHAGKVFLVDDPGFHHLKPNTYEMVAKLAEERYNSIGFIYPQSGEEKNQIVALWRKAPAEKLDKEFY
Ga0183757_1000001205F075436AGGAGGVSEDVKNYINNVLDERRQEFGGKAVCPFAAPELKANRLMVAEVGDKSLLELIDELATSDYESALFIIKKDIPAEQTKKFQHFVNRLLRQRGLKDYKNICFNPNDDVEIEGYNPRSLAPYFMVNIADKKVLSKAHRALKKTNYYDKLPDKYRKFLNLKDK
Ga0183757_100000166F098071AGGAMGIFIVTATHTDDDYKRPHVSSETAMATSHEDAVVRAVEFYLERLDGGYSFDYHNPSGFNKVIEQHRNSPQTLFSALYDYFESNPEGMFTGEFVPETLNVTISENEHVPLDTKPILSMVDEVSRYIREEM
Ga0183757_100000179F025173AGGAGMANGYALFKSLHPVGGLYRYKAPYAPQGLNPWSDGKVYLLTKWERPEGIDKKSPLLNAFFLVNGTEHCVDISFFKYLKAVE

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