Scaffold Ga0167330_1004241

Overview

Basic Information

• Taxon OID: 3300029781
• Scaffold ID: Ga0167330_1004241
• Source Dataset Name: Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP11 - Uppsala-digested 112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Gothenburg
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4064
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → unclassified Thermoprotei → Thermoprotei archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Source Dataset Sampling Location

• Location Name: Sweden
• Coordinates
  • Lat. (^o): 59.844519
  • Long. (^o): 17.659844

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080199	Metagenome / Metatranscriptome	115	N
F088950	Metagenome / Metatranscriptome	109	N
F103498	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167330_10042412	F088950	N/A	MDIDGVLKEIAEFIEEKIPELDSKVTTIYPESERFAPPTVVIDIVAGRETLIVDGTKTHELVRIAIISDKKSEINRIFKLITDAFLDYGRELTLCAYGGVSYISPVAPAFVEKNSALKRELDIVVIEFRKRR
Ga0167330_10042413	F080199	GGAG	MKIVVQGVEETNLKLSQILAAVQENVDNTLDLFSSDMTKEIKDSAPYDTGRYMSSWFYERQAELKYAIISQNSYVPYNIYLVFGTEKFKPIANEPRYKYPDSERGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL
Ga0167330_10042415	F103498	GAGG	MDSIESCELQHCRLRTDILCEVQRREEKQDERFYALIDELRLDWKETKKEVISIKDTIIQGFIALIVAVIGVYVSYLLLNVNGFF