Scaffold Ga0135224_1000197

Overview

Basic Information

• Taxon OID: 3300029753
• Scaffold ID: Ga0135224_1000197
• Source Dataset Name: Marine harbor viral communities from the Indian Ocean - SRH3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1679
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location

• Location Name: Indian Ocean
• Coordinates
  • Lat. (^o): 1.26600833
  • Long. (^o): 103.8333333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001607	Metagenome / Metatranscriptome	664	Y
F063490	Metagenome	129	Y
F082388	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0135224_10001971	F063490	AGG	MSDCYFMLQFFGTYGGLICGFGGFLTALAALLYAHVRVAEFEKSVSDLDWQQVSELSLDV
Ga0135224_10001973	F001607	AGG	MPVIANNVSLTAGSSSVNVFDNTNYQFVNEGTEIRVSAAVVGANDGAQGANVNYRFTINNTEFADDAIVPALVTGQPFTDGATSYRTNSVIATGQARNRPLLVFRNQTAGTLVVKYYVFISQQA
Ga0135224_10001974	F082388	N/A	GGLIGGIAAGAAVDFFIDEFGQQKKLVITRKLQRDIKKIFMMTGGDARTTSDIYRSATGRFIPEDMIFKIILKTFKNQGPYVTKAAVRKTRATIRKMETLCDLKDRLCPPKTTRRRPAARRSSTMITQVK