Scaffold Ga0245173

Basic Information
Taxon OID	3300029746 Open in IMG/M
Scaffold ID	Ga0245173_100107 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37136
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029746 Open in IMG/M

Scaffold ID

Ga0245173_100107 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37136

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	151991
Total Scaffold Genes	190 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (30.53%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

151991

Total Scaffold Genes

190 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (30.53%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location Name	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

United Kingdom: London

Coordinates

Lat. (^o)

51.5

Long. (^o)

-0.12

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F099406	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0245173_100107109	F074964	N/A	MITKKNVNKLQGAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFALYSKVYKDTNADKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLVKETDEYKSTYVAVKIKSYSIRTIAKCVSEYLAHESNQQ
Ga0245173_10010763	F099406	N/A	MAEVGYNSKFEGREVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLAGNYYSLDYFLEGRDFEGAFELKIVFVSFSDTNTGEGVSKSDIEIHVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRVVTTLVNLPKDTHNIIANVASATNLSMTASSEYVGREWQVRVNNTTGIDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
Ga0245173_10010783	F090484	N/A	VSCFLLILVQSSATWFWRLSSKRHKSDGYPQKSIRFFLLQIMTLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNKIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNISTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0245173_100107

Overview

Ecosystem & Geography

Associated Families

Sequences