Scaffold Ga0245239

Basic Information
Taxon OID	3300029742 Open in IMG/M
Scaffold ID	Ga0245239_100525 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36390
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029742 Open in IMG/M

Scaffold ID

Ga0245239_100525 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36390

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	68154
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	78 (97.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

68154

Total Scaffold Genes

80 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

78 (97.50%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location Name	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

United Kingdom: London

Coordinates

Lat. (^o)

51.5

Long. (^o)

-0.12

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F039147	Metagenome	164	N
F051935	Metagenome	143	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0245239_10052519	F051935	AGGAGG	MKRLLGLLLVVMVMMGGISCAVAENANPLVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSVANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDSTYIYFDFVDENQTEWELVLNLSTVYVSYFRMIYNAEGYGTTEIVFNYDHGMKFQFDAPFYFRLSYDVDPAERYSFVVEDFDLATCPLSMQDFFVPAVVSCGEEGAGLYIMAKQGIQPILVLNDGEMIEAIPQRWQRDWVIVCYRGNYLFMKTENCKMEE
Ga0245239_1005255	F039147	AGGA	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNVSYRDLETDKVYTYPASLTRMYVCGSVLAISVMQENGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYALSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRNGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDFCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKLLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRKQQENAPVWKKQGIQERIDEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFNALVSQVHQGEISLEEFVEEADKLIEGLEQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0245239_100525

Overview

Ecosystem & Geography

Associated Families

Sequences