Scaffold Ga0245259

Basic Information
Taxon OID	3300029735 Open in IMG/M
Scaffold ID	Ga0245259_100087 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37222
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029735 Open in IMG/M

Scaffold ID

Ga0245259_100087 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37222

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	154328
Total Scaffold Genes	206 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (31.55%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

154328

Total Scaffold Genes

206 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (31.55%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location Name	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

United Kingdom: London

Coordinates

Lat. (^o)

51.5

Long. (^o)

-0.12

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0245259_100087205	F074964	N/A	MITKKNVNKLQNAVIKENAANLVGAVKSYNALFSNGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDSNVDKEKGVEVKTADWCAENVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
Ga0245259_10008726	F090484	N/A	LFFVDSCSSSSVTGFWRLSAKRHKSDGYPQKSIRFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRVTDSTLVARRYRVNGVQLTLGCGKVNITKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSIAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYSDTYLYPSSQYSSL
Ga0245259_10008745	F099406	N/A	MAEVGYNSKFEGREVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLAGNYYSLDYFLSGKDLGGVFELKIVFVLFSDTNPGEGVSEFDIEIQVGTYTVTQDKAYKVLNNMVTLSNTMMSYLRFMSKAPRVVTTLANLPKDTHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
Ga0245259_10008782	F098313	N/A	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAEPDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTMQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0245259_100087

Overview

Ecosystem & Geography

Associated Families

Sequences