Scaffold Ga0245179_1000078

Overview

Basic Information

• Taxon OID: 3300029719
• Scaffold ID: Ga0245179_1000078
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37181R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 227583
• Total Scaffold Genes: 210
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 189 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F055739	Metagenome	138	N
F091068	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245179_1000078197	F055739	AGGAGG	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRNIGLSRTMRIVITALLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEEQYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDENGQMPPEGKPIAWTIEIDVLKAVWQTETMPDELYEALSEEDDVAQYIREQAEQHMITLTDAGVEDYLLEMCGAGWDEIEQISKADLLLRCGGFERAETYTVAFATEGNTQYVHSELSGLRIPLDGYAAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245179_1000078199	F043413	AGGGGG	MTERKLREKLQSAYGTMPDATRAAFEHSLTHHRVETRHPARMSRRMRTIVTLALMLMMLTVVGVAAAKLASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECEGQTYTLEIEGCGGGDFMSGMFLPDGTGSWSDSPFGFDGVLWDDDMQSPPEGAPIAWTMTFELLQPVWKVEYLPDAQYQALLAGGADTLEAYVQNNWRKHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEICQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE
Ga0245179_100007848	F091068	AGGAGG	MNEKNQHVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVMRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKDEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWSEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
Ga0245179_100007850	F043945	AGGAG	MKHNLRMAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDDENSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGGVE