Scaffold Ga0245215_1000096

Overview

Basic Information

• Taxon OID: 3300029715
• Scaffold ID: Ga0245215_1000096
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37830
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 149537
• Total Scaffold Genes: 192
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (45.31%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (41.18%)
• Associated Families: 17

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F078005	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245215_100009612	F102167	N/A	MDINQIKTYLPSGWDVVDLIDRGIIDLDIMNGKMIGEYVAVLMIKSYDRITESHNLTSFSFHDKDMGGLRRLVSNAIMAVGFRNNPLTGDGSTAIK
Ga0245215_1000096130	F076653	AGG	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNDDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTSLFERMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRRDIDWEALRLWLEKYDDPTDDGMVNSPIQFMYLYLYYTFNK
Ga0245215_1000096139	F083451	N/A	MDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMRYRQEIKDIVDRESKIMLTKSESLVDLMNDADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFIKFDNLDRLMMECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDMFKEEAEMVNETDRDKIEEFNKKLDHD
Ga0245215_1000096159	F078005	N/A	MKKSKFVKELEKIIDMVKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMDLTVEANTIANMDDKTFACLMSEVYKQKFTKAITMSEDEDDEDN
Ga0245215_1000096181	F085718	AGGAG	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGDRPIVVMVENDNADDYIILRYNETGRRNINSQSSLDLMLSVKERKPELWVVVISYMDNKDKRQKMVLPDFFSKNIRGNIYLQGSSKSSVSYYVDKLEENGCFDELCEKIRIKRDRIYNMEIISLSDDETTV
Ga0245215_1000096189	F080673	GAG	MGIYDMNEMLLIELQDEALSYLRDNITKDEAYHILTTDKDMIEILIADKKDGSKRIKILDAEYTIGKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDIDAILNSGNREKVMKYTYISVQLDNIQTIEKRRVIFEITGHRMDDDKERIDFMFIYFMARLCV
Ga0245215_100009629	F058555	N/A	MGTKIGILHIMKSNFDKILTERYTPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVLLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKSLDSNTRRRMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMNRLNIKLSKEGMMLISQRTVYRMIKDVLSMCCKTISDLYDEVKKNNGIVNTKDRKSVTIGHLRLSYRGTIMHIIIAEDYIRDVFLRVKGVEMSKAG
Ga0245215_100009635	F093883	N/A	MEEDKDIKKEIRDYLKEEANTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVAEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
Ga0245215_100009641	F089592	N/A	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGMDKDEVDRLVNQRVNNIMKPFEDISQKDLSQTNLEFWDDAKDKIFMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFEEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKTKKVKDVKKKEDVEEGDKVDKEE
Ga0245215_100009642	F089591	AGGAGG	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVMWEAKNENVHEFLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFLTDDVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPNPLVEEILDMVAKQFNLNENELNRYSMDKDNVASFK
Ga0245215_100009649	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVNNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQHRKNSNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQCCKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIELPNVGQRMTEMPEAITSKTEVYHLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLNIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLNDWVSGERRTGWNDDNMSGRGLEHLTSFIAVNSNSLRMDKLPDYIYEMRAITWFNVNYSTHSQQRSDDFVDSFYKLVTEWDQITMTSVANDGKRNQFYGLSVSMYGSTFPTENQRPSGTEKAPEGFVKGSSSGSPATPMEKIYVLKNNYAQKWTIKPA
Ga0245215_100009651	F089590	N/A	MGNKSMIDKIGALWNIAIAYGTSCWAYFQPVHHLLEVLLIVLLANFLVRLVQSARKWKARRSRKRRFSLSRWFREVRLVGILKEFLLSCFIVMTLCVIYKTLYPIEEQDASVILSVTKYGVYAALVAYVMLLLNTIGDTFPDVYLVKVFKIIFSRVNILKMFGTTKDLPDDVMEDIKKVANDEVKNKS
Ga0245215_100009652	F075481	AGAAGG	MMRLRTSLRAIVCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKDVDPSTGERPVSSQTDAHIVIGRRDSTVVADSICINKKMNDIENIDNKIDIKSKDVDDKKESRWPIAWIVAGILMILLVLVYIFKKIKVL
Ga0245215_100009659	F106193	N/A	MGCNTCKEKALKAERERIERSMMNRPSSTVVSGREYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP
Ga0245215_100009677	F064725	AGG	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI
Ga0245215_10000968	F083452	N/A	MSGRIKIKPKNKDKKHKIDVFKVIEGRFKNMNEPRDPIDMDPSKGLVRIRDGAGFREVERGGCPRRDYLDPLEEELGAKLSIDLIDKYVKRK
Ga0245215_100009688	F050794	GGA	MQDLRIQRVKVLMMLYASNYFVKVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMCDLLDELKDDIDLNILIFDVSQLLIKYNLFGLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKAVMMMEDRYDYALYMTEEYN