Scaffold Ga0245233_100009

Overview

Basic Information

• Taxon OID: 3300029710
• Scaffold ID: Ga0245233_100009
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 446758
• Total Scaffold Genes: 410
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 375 (91.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073573	Metagenome	120	N
F095494	Metagenome	105	N
F096287	Metagenome	105	N
F101192	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245233_100009137	F096287	AGGAG	MQRIQKRRAGQRQTQNALIGLLSAVSMTRIGLTQLLPLCGSAAWWLSAACMLPGLCVYGALRLLLRHTHTRTLTDCARKLLGNFGIILIMLTLTLPLLLDGIASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNRDGLPRGVYLLRHVLLVAATIIAINALLDAHPDGIVPLLGEGVPPLLSGIRSAWGMSWVLLLLLEFPVEEGTRRTPAMFVALLPCPVILFLLSLAIPPELTVPGRSLASGLVLPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTAFTAWSLVPGVLLLLVLTIARLCRREKA
Ga0245233_100009195	F095494	GGAGG	VSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEAARTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIAVAFAVSHPLLWYENWTTADEQQHFVTSHEIAIEMLETAVADPTLPSGDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKLLLFSGRTSQEEVTSLLRTIIREIGE
Ga0245233_10000957	F101192	GGAGG	MTYRGWLLVGIALLLTALSGTQTSLCQRMRSVPVYCGLTYWEVQQLAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
Ga0245233_10000958	F073573	AGGAGG	MPTIVSFYQRFPNEAPPLNLSAFDHTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMPFQVRRMELRTGDTTYAILPDNVQQYTMRGETDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCEESAITYQPAFLWYKDYCTKA