NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224414_10534415

Scaffold Ga0224414_10534415


Overview

Basic Information
Taxon OID3300029705 Open in IMG/M
Scaffold IDGa0224414_10534415 Open in IMG/M
Source Dataset NameGoat Fecal Pellets diluted in media
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1597
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium DNF00626(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4204Long. (o)-119.6671Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050059Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0224414_105344151F050059GAGGVRKPRGKASRESHRSLDPHDGKRDPAATAREESTRACPHLRGGLTLQGRLQKNPNIHVSTAEETSGSGPESTQVVRPGHQQESYQEKPPSIWHGDWTLMKSPERVPEVPVVSREHLPQLEKIQEVLPSRRDEAHFQ

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